Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ01015.1 | SEQ29238.1 | SAMN03080615_00001 | SAMN03080615_01076 | 4-hydroxy-2-oxovalerate aldolase. | Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 0.461 |
SEQ01015.1 | SEQ43374.1 | SAMN03080615_00001 | SAMN03080615_01533 | 4-hydroxy-2-oxovalerate aldolase. | Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase. | 0.999 |
SEQ01015.1 | SEQ47440.1 | SAMN03080615_00001 | SAMN03080615_01588 | 4-hydroxy-2-oxovalerate aldolase. | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.658 |
SEQ01015.1 | SEQ53973.1 | SAMN03080615_00001 | SAMN03080615_01912 | 4-hydroxy-2-oxovalerate aldolase. | ATP-binding cassette, subfamily C. | 0.741 |
SEQ01015.1 | SEQ53996.1 | SAMN03080615_00001 | SAMN03080615_01913 | 4-hydroxy-2-oxovalerate aldolase. | Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase. | 0.569 |
SEQ01015.1 | SEQ76338.1 | SAMN03080615_00001 | SAMN03080615_02680 | 4-hydroxy-2-oxovalerate aldolase. | Phospholipase C. | 0.420 |
SEQ01015.1 | SEQ89419.1 | SAMN03080615_00001 | SAMN03080615_03138 | 4-hydroxy-2-oxovalerate aldolase. | Phosphoserine phosphatase. | 0.567 |
SEQ01015.1 | SEQ95078.1 | SAMN03080615_00001 | SAMN03080615_03357 | 4-hydroxy-2-oxovalerate aldolase. | Acyl transferase domain-containing protein. | 0.999 |
SEQ01015.1 | SER05637.1 | SAMN03080615_00001 | SAMN03080615_03766 | 4-hydroxy-2-oxovalerate aldolase. | Nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.458 |
SEQ01015.1 | SER20165.1 | SAMN03080615_00001 | SAMN03080615_04322 | 4-hydroxy-2-oxovalerate aldolase. | Nitrogen fixation protein NifQ. | 0.458 |
SEQ29238.1 | SEQ01015.1 | SAMN03080615_01076 | SAMN03080615_00001 | Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | 4-hydroxy-2-oxovalerate aldolase. | 0.461 |
SEQ29238.1 | SEQ53996.1 | SAMN03080615_01076 | SAMN03080615_01913 | Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase. | 0.826 |
SEQ43374.1 | SEQ01015.1 | SAMN03080615_01533 | SAMN03080615_00001 | Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase. | 4-hydroxy-2-oxovalerate aldolase. | 0.999 |
SEQ43374.1 | SEQ53996.1 | SAMN03080615_01533 | SAMN03080615_01913 | Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase. | Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase. | 0.640 |
SEQ43374.1 | SEQ76338.1 | SAMN03080615_01533 | SAMN03080615_02680 | Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase. | Phospholipase C. | 0.726 |
SEQ43374.1 | SEQ95078.1 | SAMN03080615_01533 | SAMN03080615_03357 | Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase. | Acyl transferase domain-containing protein. | 0.998 |
SEQ47440.1 | SEQ01015.1 | SAMN03080615_01588 | SAMN03080615_00001 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 4-hydroxy-2-oxovalerate aldolase. | 0.658 |
SEQ47440.1 | SEQ53996.1 | SAMN03080615_01588 | SAMN03080615_01913 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase. | 0.629 |
SEQ47440.1 | SEQ95078.1 | SAMN03080615_01588 | SAMN03080615_03357 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Acyl transferase domain-containing protein. | 0.796 |
SEQ47440.1 | SER05637.1 | SAMN03080615_01588 | SAMN03080615_03766 | Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | Nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.646 |
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