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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ57132.1ABC-2 type transport system ATP-binding protein. (257 aa)    
Predicted Functional Partners:
SEQ57073.1
ABC-2 type transport system permease protein.
 
 
 0.970
SEQ57094.1
ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system.
 
 
  0.954
SEQ57116.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
    0.951
SEQ57192.1
NitT/TauT family transport system substrate-binding protein.
 
  
 0.947
SER02728.1
ABC-2 type transport system permease protein.
 
 
 0.943
SEQ57170.1
NitT/TauT family transport system permease protein.
 
  
  0.917
SEQ14656.1
ABC-2 type transport system permease protein.
 
 
 0.873
SEQ53115.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
  
 
0.860
SEQ57156.1
NitT/TauT family transport system ATP-binding protein.
 
  
 
0.851
SEQ13757.1
Branched-chain amino acid transport system ATP-binding protein.
 
  
 
0.832
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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