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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ57870.1ABC-2 type transport system ATP-binding protein. (316 aa)    
Predicted Functional Partners:
SEQ57844.1
ABC-2 type transport system permease protein.
 
 0.971
SER02728.1
ABC-2 type transport system permease protein.
 
 
 0.943
SEQ88998.1
Branched-chain amino acid transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 
0.910
SEQ01305.1
ABC-2 type transport system permease protein.
 
 0.883
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.787
SEQ39785.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).
 
   
 
0.781
SEQ61494.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
 
0.764
SEQ57783.1
Nitroreductase.
  
    0.700
SEQ57747.1
Thioesterase domain-containing protein, putative.
       0.674
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.668
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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