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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ58296.1Polysaccharide pyruvyl transferase. (423 aa)    
Predicted Functional Partners:
SEQ58278.1
Sulfotransferase domain-containing protein.
       0.714
SEQ26997.1
Hypothetical protein.
  
 
 0.700
SEQ58331.1
Hypothetical protein.
  
  
 0.699
SEQ95618.1
Glycosyltransferase, GT2 family.
 
 
 0.699
SEQ58257.1
UDP-glucose 4-epimerase.
  
 
 0.650
SEQ95078.1
Acyl transferase domain-containing protein.
  
 0.629
SER15014.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
  
 0.543
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
  
 0.503
SER14631.1
Capsular exopolysaccharide family.
  
  
 0.451
SEQ95487.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
  
 0.432
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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