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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ58626.1GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex. (232 aa)    
Predicted Functional Partners:
SEQ30269.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.778
SEQ70194.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.764
SEQ13630.1
Transcriptional regulator, GntR family.
  
     0.759
SEQ36109.1
GntR family transcriptional regulator, vanillate catabolism transcriptional regulator.
  
  
 0.747
SEQ13932.1
Transcriptional regulator, GntR family.
  
  
 0.740
SEQ03422.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.692
SEQ07470.1
Transcriptional regulator, GntR family.
  
  
 0.662
SEQ58647.1
L-lactate dehydrogenase complex protein LldE.
 
   
 0.625
SEQ58666.1
L-lactate dehydrogenase complex protein LldF.
 
   
 0.591
SEQ58692.1
L-lactate dehydrogenase complex protein LldG.
 
   
 0.587
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.