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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ58863.1Peptide/nickel transport system permease protein. (414 aa)    
Predicted Functional Partners:
SEQ58911.1
Peptide/nickel transport system substrate-binding protein.
 
 0.998
SEQ58845.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.997
SEQ58884.1
Peptide/nickel transport system permease protein.
 
 0.997
SEQ68220.1
Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.989
SEQ68259.1
Microcin C transport system permease protein.
  
 0.897
SEQ39239.1
Hypothetical protein.
  
 
 0.885
SEQ68271.1
Microcin C transport system substrate-binding protein.
 
 
 0.877
SEQ58821.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
SEQ11088.1
Putative phosphonate transport system ATP-binding protein.
 
     0.612
SEQ58953.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
    0.561
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.