Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
SEQ59552.1Tetratricopeptide repeat-containing protein. (532 aa)    
Predicted Functional Partners:
SEQ81859.1
Response regulator receiver domain-containing protein.
 
 
 0.945
SEQ20556.1
Chemotaxis protein histidine kinase CheA.
  
 0.905
SEQ90228.1
Signal transduction histidine kinase.
   
 0.896
SEQ04445.1
PAS domain S-box-containing protein.
   
 0.840
SER08260.1
Two-component system, chemotaxis family, response regulator CheV.
 
 0.800
SER07560.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
 0.794
SEQ13387.1
PAS domain S-box-containing protein.
   
 0.780
SEQ90488.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.780
SEQ85500.1
PAS domain S-box-containing protein.
   
 0.771
SER07807.1
PAS domain S-box-containing protein.
   
 0.768
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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