STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ59598.1OmpA family protein. (282 aa)    
Predicted Functional Partners:
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.892
SER21059.1
Type VI secretion system protein ImpK.
  
 0.734
SEQ96250.1
Flagellar assembly protein T, N-terminal domain.
  
 
 
 0.725
SER07215.1
Protein of unknown function.
  
     0.710
SEQ95997.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
 0.704
SER07239.1
CheW-like domain-containing protein.
 
 
 0.676
SEQ29470.1
Chemotaxis protein MotB.
  
 
 0.674
SER19723.1
Protein of unknown function.
  
     0.668
SEQ91582.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
 
 
 0.639
SEQ59552.1
Tetratricopeptide repeat-containing protein.
 
     0.636
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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