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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ61189.1DNA transformation protein. (101 aa)    
Predicted Functional Partners:
SEQ61169.1
Uncharacterized protein involved in response to NO.
       0.773
SEQ02452.1
SIR2-like domain-containing protein.
    
   0.647
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
   0.647
SEQ28039.1
NAD-dependent protein deacetylase, SIR2 family.
    
   0.647
SEQ05564.1
Zn-dependent protease with chaperone function.
  
     0.632
SEQ61148.1
Iron complex transport system substrate-binding protein.
       0.526
hisE
phosphoribosyl-ATP pyrophosphatase.
    
  0.516
SEQ57632.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Belongs to the HisA/HisF family.
    
  0.516
SEQ48936.1
Phage portal protein, lambda family.
  
     0.489
SEQ68890.1
Competence protein ComEC.
      
 0.412
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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