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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ61451.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (153 aa)    
Predicted Functional Partners:
SEQ61468.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 0.999
SEQ61494.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.999
SEQ61440.1
MlaC protein.
 
 0.989
SEQ61414.1
ABC-type transporter Mla maintaining outer membrane lipid asymmetry, MlaB component, contains STAS domain.
  
  0.984
SEQ07409.1
Phospholipid-binding lipoprotein MlaA.
 
   
 0.818
SEQ29470.1
Chemotaxis protein MotB.
   
   0.672
SER07272.1
Chemotaxis protein MotB.
   
   0.672
SER21059.1
Type VI secretion system protein ImpK.
   
   0.672
SEQ61387.1
Acid stress-induced BolA-like protein IbaG/YrbA, predicted regulator of iron metabolism; Belongs to the BolA/IbaG family.
     
 0.565
SER07342.1
Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
  
  0.540
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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