STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ61711.1Phosphocarrier protein. (89 aa)    
Predicted Functional Partners:
SEQ61683.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
 
 0.990
SEQ29598.1
Phosphotransferase system, enzyme I, PtsI; Belongs to the PEP-utilizing enzyme family.
  
 
 0.980
SEQ93569.1
PEP-utilising enzyme, TIM barrel domain.
  
 
 0.980
SEQ93548.1
GAF domain-containing protein; Belongs to the PEP-utilizing enzyme family.
  
 
 0.979
SEQ50651.1
Transcriptional regulator, LacI family.
   
 
 0.873
SEQ50667.1
Transcriptional regulator, LacI family.
   
 
 0.873
SEQ90006.1
Transcriptional regulator, LacI family.
   
 
 0.873
SEQ61695.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
  
 0.856
SEQ61662.1
Putative sigma-54 modulation protein.
  
  
 0.802
rpsG
Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
    0.777
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.