STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ62135.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (337 aa)    
Predicted Functional Partners:
SEQ04222.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.811
SEQ69234.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.811
SEQ79369.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.811
SER22042.1
Tripartite ATP-independent transporter, DctQ component.
  
    0.811
SEQ80471.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.798
SEQ97824.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.787
SER22062.1
TRAP transporter, DctM subunit.
  
    0.756
SEQ69255.1
TRAP transporter, DctM subunit.
  
    0.754
SEQ04246.1
TRAP transporter, DctM subunit.
  
    0.730
SEQ79353.1
TRAP transporter, DctM subunit.
  
    0.723
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.