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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ62465.1Two-component system, OmpR family, sensor kinase. (445 aa)    
Predicted Functional Partners:
SEQ62475.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.984
SEQ81859.1
Response regulator receiver domain-containing protein.
  
 0.969
SEQ04445.1
PAS domain S-box-containing protein.
   
 0.962
SEQ76004.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 0.927
SER02541.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.924
SEQ90228.1
Signal transduction histidine kinase.
  
 0.908
SEQ30202.1
Two-component system, OmpR family, response regulator TctD.
 0.887
SEQ85500.1
PAS domain S-box-containing protein.
 
 
 0.876
SEQ29283.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.867
SEQ02283.1
Two component transcriptional regulator, winged helix family.
 0.865
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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