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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ66311.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
SER01504.1
Putative redox protein.
  
     0.731
SEQ66300.1
Hypothetical protein.
       0.608
SEQ66281.1
Methyltransferase domain-containing protein.
       0.535
SEQ13591.1
Predicted arabinose efflux permease, MFS family.
  
     0.528
SEQ10438.1
Transcriptional regulator, TraR/DksA family.
  
     0.480
SEQ66263.1
Uncharacterized conserved protein.
       0.477
SEQ66336.1
Hypothetical protein.
       0.462
SEQ08473.1
anti-ECFsigma factor, ChrR.
  
     0.459
SEQ81455.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.439
SEQ66349.1
Uncharacterized membrane protein YckC, RDD family.
       0.404
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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