STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ68220.1Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (532 aa)    
Predicted Functional Partners:
SEQ68240.1
Microcin C transport system permease protein.
 
 0.998
SEQ58863.1
Peptide/nickel transport system permease protein.
 
 0.989
SEQ68259.1
Microcin C transport system permease protein.
 
 0.983
SEQ68271.1
Microcin C transport system substrate-binding protein.
 
 
 0.982
SEQ58884.1
Peptide/nickel transport system permease protein.
 
 
 0.959
SEQ39239.1
Hypothetical protein.
  
 
 0.620
SEQ58845.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.582
SEQ68302.1
Membrane-bound lytic murein transglycosylase D.
       0.576
SEQ58911.1
Peptide/nickel transport system substrate-binding protein.
  
 
 0.566
SEQ68292.1
Hypothetical protein.
       0.558
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.