Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEQ69184.1Protein of unknown function. (193 aa)    
Predicted Functional Partners:
SEQ37444.1
Hypothetical protein.
  
     0.622
SER03975.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.603
SEQ95143.1
Short-chain dehydrogenase.
  
     0.559
SEQ69202.1
Transcriptional regulator, PaaX family.
       0.519
SEQ79835.1
Hypothetical protein.
  
     0.519
SEQ67725.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.470
SEQ12712.1
Branched-chain amino acid transport system substrate-binding protein.
  
     0.462
SEQ25447.1
Succinylglutamate desuccinylase.
  
     0.460
SEQ67422.1
tRNA-processing RNAse BN.
  
     0.452
SEQ30416.1
Universal stress protein family protein.
  
     0.407
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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