close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ69255.1TRAP transporter, DctM subunit. (442 aa)    
Predicted Functional Partners:
SEQ69221.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.989
SEQ69234.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.878
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.826
SEQ81140.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.773
SEQ97806.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.769
SEQ80495.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.767
SER22031.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.766
SEQ79384.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.760
SEQ36126.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.759
SEQ81204.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.759
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.