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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ70291.12-methylaconitate cis-trans isomerase. (393 aa)    
Predicted Functional Partners:
SEQ70259.1
Aconitate hydratase.
 
 
 0.961
SEQ36338.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
 
 
 0.811
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.789
SEQ70242.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
  
 0.698
SEQ80518.1
2-methylcitrate dehydratase PrpD.
 
  0.651
SEQ35854.1
2-pyrone-4,6-dicarboxylate lactonase.
   
 0.639
SEQ35798.1
4-oxalomesaconate hydratase.
    
 0.631
SEQ30346.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
     0.579
SEQ36460.1
Protocatechuate 4,5-dioxygenase alpha subunit.
    
 0.573
SEQ30219.1
Tricarballylate dehydrogenase.
    0.563
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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