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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ70587.1ATP-binding cassette, subfamily B. (589 aa)    
Predicted Functional Partners:
SEQ95078.1
Acyl transferase domain-containing protein.
 
 0.963
SEQ50575.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
    
0.905
SEQ50741.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
    
0.905
SER02085.1
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-).
 
     
0.882
SEQ04582.1
ATP-binding cassette, subfamily B.
 
 
 
0.844
SEQ43940.1
ATP-binding cassette, subfamily C, LapB.
   
 
0.815
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
  
 
 0.741
SER02718.1
ABC-2 type transport system ATP-binding protein.
 
 
0.741
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
  
 
0.715
SEQ70568.1
Hypothetical protein.
  
  
 0.607
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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