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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ72805.13-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. (407 aa)    
Predicted Functional Partners:
SEQ49726.1
Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 0.986
SEQ49754.1
Nitrite reductase (NADH) small subunit.
 0.985
SEQ97635.1
Ethylbenzene dioxygenase ferredoxin subunit.
  
 0.927
SEQ72826.1
Ferredoxin, 2Fe-2S.
 
 
 0.926
SEQ80822.1
rubredoxin-NAD+ reductase.
 
0.818
SEQ49828.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
 0.805
SEQ72840.1
Cytochrome P450.
  
 0.804
SEQ49769.1
Nitrite reductase (NADH) large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 
0.803
SEQ52692.1
Formate dehydrogenase major subunit.
 
 
 0.783
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.781
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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