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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ72858.1AraC family transcriptional regulator, transcriptional activator of pobA. (310 aa)    
Predicted Functional Partners:
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.804
SEQ05950.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.719
SER08127.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.701
SER08161.1
Flagellar hook protein FlgE.
    
   0.701
SEQ10001.1
Transcriptional regulator, AraC family.
 
   0.654
SEQ72840.1
Cytochrome P450.
 
 
 
 0.654
SEQ50589.1
Transcriptional regulator, AraC family.
  
   0.650
SEQ28825.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.643
SEQ85054.1
Chorismate mutase.
  
 
 0.641
SEQ23625.1
AraC-like ligand binding domain-containing protein.
 
   0.633
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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