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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ74719.1Type IV pilus assembly protein PilZ. (116 aa)    
Predicted Functional Partners:
SEQ79471.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
  0.953
SEQ89399.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
   0.931
SEQ14632.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.899
SEQ26320.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.899
SEQ38264.1
Diguanylate cyclase/phosphodiesterase.
    
   0.899
SEQ42828.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.899
SER05285.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.899
SER16005.1
Diguanylate cyclase/phosphodiesterase.
    
   0.899
SER16737.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
   0.899
SER17943.1
Type IV pilus assembly protein PilB.
  
 
 
 0.871
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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