Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEQ74929.1tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system. (111 aa)    
Predicted Functional Partners:
SEQ75013.1
tRNA 2-thiouridine synthesizing protein D.
 
 
 0.996
SEQ74971.1
tRNA 2-thiouridine synthesizing protein B.
 
 
 0.989
SEQ74986.1
tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family.
 
  
 0.976
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.909
SEQ74912.1
2-hydroxy-3-oxopropionate reductase.
       0.752
SEQ74891.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
       0.625
SEQ74880.1
Purine-binding chemotaxis protein CheW.
       0.616
SEQ68023.1
Anthranilate phosphoribosyltransferase.
  
    0.594
SEQ05637.1
Fe-S oxidoreductase.
 
 
 
 0.536
SEQ75032.1
Modulator of FtsH protease; Belongs to the BI1 family.
     
 0.524
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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