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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ74986.1tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family. (122 aa)    
Predicted Functional Partners:
SEQ74971.1
tRNA 2-thiouridine synthesizing protein B.
 
 0.999
SEQ75013.1
tRNA 2-thiouridine synthesizing protein D.
 
 0.999
SEQ74929.1
tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system.
 
  
 0.970
SEQ74912.1
2-hydroxy-3-oxopropionate reductase.
       0.752
SEQ74891.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
       0.625
SEQ74880.1
Purine-binding chemotaxis protein CheW.
       0.616
SEQ75032.1
Modulator of FtsH protease; Belongs to the BI1 family.
 
     0.589
rdgC
Recombination associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.
  
     0.507
thiI
[ThiS-adenylate] sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
     
 0.433
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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