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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ75668.1Predicted ABC-type ATPase. (193 aa)    
Predicted Functional Partners:
SEQ75684.1
ParD-like antitoxin of type II toxin-antitoxin system.
       0.792
SEQ05950.1
Transcriptional regulator, XRE family with cupin sensor.
    
 
 0.635
SEQ06337.1
Transcriptional regulator, XRE family with cupin sensor.
    
 
 0.635
SEQ13079.1
Transcriptional regulator, XRE family with cupin sensor.
    
 
 0.635
SEQ21792.1
Helix-turn-helix.
    
 
 0.635
SEQ22247.1
Helix-turn-helix domain-containing protein.
    
 
 0.635
SER00748.1
Transcriptional regulator, XRE family with cupin sensor.
    
 
 0.635
SEQ75706.1
Uncharacterized membrane protein YsdA, DUF1294 family.
       0.518
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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