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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ76338.1Phospholipase C. (725 aa)    
Predicted Functional Partners:
SEQ05500.1
Cation transport regulator ChaC.
 
     0.796
SEQ43374.1
Acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase.
  
  
 0.726
SEQ76313.1
Deoxyribonuclease-2.
 
     0.705
SEQ05545.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.682
SEQ14532.1
Outer membrane protein (porin).
  
     0.640
SEQ53996.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
     
 0.631
SEQ04401.1
Alginate export.
  
     0.607
SEQ78973.1
Alginate export.
  
     0.572
SEQ90292.1
Predicted arabinose efflux permease, MFS family.
  
  
  0.543
SEQ04445.1
PAS domain S-box-containing protein.
 
     0.540
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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