close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ79066.1Catechol 2,3-dioxygenase. (152 aa)    
Predicted Functional Partners:
SEQ79045.1
Sortilin, neurotensin receptor 3.
 
     0.914
SEQ79028.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.853
SEQ79124.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
 
  
  0.845
SEQ79088.1
Amino acid synthesis.
 
     0.777
SEQ78988.1
Acetolactate synthase-1/2/3 large subunit.
 
    0.713
SEQ79006.1
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.706
SEQ79109.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
  
  0.684
SEQ27771.1
CDP-4-dehydro-6-deoxyglucose reductase.
    
  0.520
SEQ39591.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
    
  0.520
SER22160.1
CDP-4-dehydro-6-deoxyglucose reductase.
    
  0.520
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.