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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ81029.1Uncharacterized conserved protein. (300 aa)    
Predicted Functional Partners:
SEQ81059.1
Aliphatic nitrilase.
 
     0.681
SEQ80933.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.591
SEQ80950.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-).
       0.531
SEQ80966.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).
       0.531
SEQ80988.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.
       0.531
SEQ81010.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
       0.531
SEQ87038.1
Anthranilate 1,2-dioxygenase.
  
     0.472
SEQ87023.1
Anthranilate 1,2-dioxygenase.
  
     0.464
SEQ39640.1
Benzoate 1,2-dioxygenase, alpha subunit.
  
     0.418
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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