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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ81140.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (339 aa)    
Predicted Functional Partners:
SEQ81204.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
 
0.916
SEQ35686.1
TRAP transporter, DctM subunit.
  
    0.782
SEQ97842.1
TRAP transporter, DctM subunit.
  
    0.781
SEQ04246.1
TRAP transporter, DctM subunit.
  
    0.778
SEQ79353.1
TRAP transporter, DctM subunit.
  
    0.777
SER22062.1
TRAP transporter, DctM subunit.
  
    0.774
SEQ69255.1
TRAP transporter, DctM subunit.
  
    0.773
SEQ80466.1
TRAP transporter, DctM subunit.
  
    0.772
SER22113.1
TRAP transporter, DctM subunit.
  
    0.771
SEQ97824.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.753
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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