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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ82325.1Amino acid ABC transporter ATP-binding protein, PAAT family. (252 aa)    
Predicted Functional Partners:
SEQ82348.1
General L-amino acid transport system permease protein.
 0.995
SER02106.1
Amino acid ABC transporter membrane protein 2, PAAT family (TC 3.A.1.3.-).
 0.982
SEQ25371.1
Amino acid ABC transporter membrane protein 2, PAAT family.
  
 0.971
SER02131.1
Amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-).
 0.971
SEQ25319.1
Polar amino acid transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.909
SER02755.1
Extracellular solute-binding protein, family 3.
 
 0.893
SER19113.1
Extracellular solute-binding protein, family 3.
 
 0.893
SER02139.1
Polar amino acid transport system substrate-binding protein.
 0.869
SEQ25342.1
Polar amino acid transport system permease protein.
  
 0.824
SER02728.1
ABC-2 type transport system permease protein.
 
      0.789
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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