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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ86259.1Flp pilus assembly protein TadD, contains TPR repeats. (479 aa)    
Predicted Functional Partners:
SEQ08398.1
Beta-lactamase superfamily domain-containing protein.
  
     0.693
SEQ08418.1
Adenylate cyclase.
 
  
  0.663
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.646
SEQ85383.1
Zinc carboxypeptidase.
 
     0.637
SEQ01400.1
PAS domain S-box-containing protein.
    
  0.611
SEQ20574.1
Twitching motility protein PilJ.
    
  0.508
SEQ41462.1
Hypothetical protein.
  
     0.505
SEQ08381.1
FecR family protein.
 
    0.482
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.475
SEQ25532.1
Peptidase family M48.
  
     0.456
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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