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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ86271.1Murein L,D-transpeptidase YafK. (407 aa)    
Predicted Functional Partners:
SEQ08398.1
Beta-lactamase superfamily domain-containing protein.
  
     0.735
SEQ85383.1
Zinc carboxypeptidase.
 
   
 0.721
SEQ08381.1
FecR family protein.
  
   
 0.653
SEQ08418.1
Adenylate cyclase.
  
     0.588
SEQ08351.1
Tetratricopeptide repeat-containing protein.
  
     0.587
SEQ91582.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.519
SER07574.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.519
SEQ68890.1
Competence protein ComEC.
     
 0.487
SEQ41462.1
Hypothetical protein.
  
   
 0.476
SEQ31165.1
Iron complex outermembrane recepter protein.
  
     0.473
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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