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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ86838.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (313 aa)    
Predicted Functional Partners:
SEQ86856.1
Nicotinamidase-related amidase.
 
    0.784
SEQ08511.1
Transcriptional regulator, AraC family.
  
   0.660
SEQ73822.1
Transcriptional regulator, AraC family.
 
   0.630
SER02615.1
Helix-turn-helix domain-containing protein.
  
   0.625
SEQ01232.1
AraC-type DNA-binding protein.
  
   0.600
SEQ72898.1
AraC-type DNA-binding protein.
  
   0.567
SEQ72858.1
AraC family transcriptional regulator, transcriptional activator of pobA.
 
 
 0.539
SER04553.1
Transcriptional regulator, AraC family.
 
   0.533
SEQ66983.1
AraC-type DNA-binding protein.
  
   0.531
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.514
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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