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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ87301.1Hypothetical protein. (573 aa)    
Predicted Functional Partners:
SEQ87311.1
Protein of unknown function.
      0.925
SEQ87243.1
Zn-dependent dipeptidase, dipeptidase homolog.
 
     0.858
SEQ87278.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.821
SEQ87261.1
Aldehyde dehydrogenase (NAD+).
 
     0.789
SEQ05582.1
Membrane dipeptidase.
 
     0.723
SEQ87224.1
Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.580
SEQ80206.1
Aminomethyltransferase; Belongs to the GcvT family.
  
     0.554
SEQ87339.1
Hypothetical protein.
 
     0.554
SEQ73770.1
Predicted arabinose efflux permease, MFS family.
  
     0.424
SEQ84231.1
Protein of unknown function.
  
     0.400
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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