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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ88832.1Putative sterol carrier protein. (105 aa)    
Predicted Functional Partners:
SER03793.1
Hypothetical protein.
  
     0.684
SEQ88849.1
Acyl-CoA dehydrogenase.
 
     0.558
SEQ54036.1
Uncharacterized protein; Belongs to the UPF0149 family.
  
     0.515
SEQ88810.1
Long-chain acyl-CoA synthetase.
       0.476
SEQ22699.1
Hypothetical protein.
  
     0.435
SEQ40971.1
Calcineurin-like phosphoesterase.
  
     0.425
SEQ88748.1
Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.420
SER19723.1
Protein of unknown function.
  
     0.418
SEQ88795.1
Enoyl-CoA hydratase/carnithine racemase.
       0.408
SEQ37166.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.400
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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