STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ89972.1TRAP transporter, DctM subunit. (440 aa)    
Predicted Functional Partners:
SEQ89948.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.996
SEQ89929.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
 
  0.989
SEQ90086.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.972
SEQ89868.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
  0.929
SEQ90074.1
TRAP transporter, DctM subunit.
  
  
 
0.911
SEQ89981.1
Gluconokinase.
       0.756
SER15200.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
    0.733
SEQ52027.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
    0.716
SEQ52003.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
    0.703
SEQ20766.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.686
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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