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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ93548.1GAF domain-containing protein; Belongs to the PEP-utilizing enzyme family. (431 aa)    
Predicted Functional Partners:
SEQ93569.1
PEP-utilising enzyme, TIM barrel domain.
     0.994
SEQ61711.1
Phosphocarrier protein.
  
 
 0.979
rppH
Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
  
 
  0.852
SEQ29598.1
Phosphotransferase system, enzyme I, PtsI; Belongs to the PEP-utilizing enzyme family.
  
  
 
0.745
SEQ61683.1
PTS IIA-like nitrogen-regulatory protein PtsN.
  
   
 0.745
SEQ08418.1
Adenylate cyclase.
    
  0.722
SEQ76507.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.708
SEQ93510.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.545
SER10112.1
Two-component sensor kinase CbrA.
  
 
   0.534
SEQ04445.1
PAS domain S-box-containing protein.
  
  0.522
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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