Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEQ95112.1Capsular polysaccharide export protein. (432 aa)    
Predicted Functional Partners:
SEQ95078.1
Acyl transferase domain-containing protein.
 
     0.946
SEQ95184.1
Capsular polysaccharide export protein.
   
 0.927
SEQ95143.1
Short-chain dehydrogenase.
     0.882
SEQ95088.1
8-amino-7-oxononanoate synthase.
 
     0.881
SEQ95436.1
Capsular polysaccharide transport system permease protein.
 
 
 
 0.847
SEQ95132.1
Phosphoglycerol transferase MdoB.
 
   
 0.840
SEQ95457.1
Capsular polysaccharide transport system ATP-binding protein.
 
   
 0.822
SEQ95469.1
Capsular polysaccharide transport system permease protein.
 
   
 0.811
SEQ95487.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
   
 0.809
SEQ95196.1
Hypothetical protein.
 
     0.714
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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