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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ95132.1Phosphoglycerol transferase MdoB. (521 aa)    
Predicted Functional Partners:
SEQ95143.1
Short-chain dehydrogenase.
 
     0.948
SEQ95184.1
Capsular polysaccharide export protein.
 
     0.840
SEQ95078.1
Acyl transferase domain-containing protein.
 
   
 0.814
SEQ95469.1
Capsular polysaccharide transport system permease protein.
 
    0.814
SEQ95196.1
Hypothetical protein.
 
  
 0.804
SEQ95112.1
Capsular polysaccharide export protein.
 
   
 0.802
SEQ95436.1
Capsular polysaccharide transport system permease protein.
 
     0.772
SEQ95487.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
   
 0.708
SEQ95088.1
8-amino-7-oxononanoate synthase.
 
     0.692
SEQ95457.1
Capsular polysaccharide transport system ATP-binding protein.
 
   
 0.664
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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