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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ95143.1Short-chain dehydrogenase. (260 aa)    
Predicted Functional Partners:
SEQ95078.1
Acyl transferase domain-containing protein.
 
 0.985
SEQ95132.1
Phosphoglycerol transferase MdoB.
 
     0.948
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
  
 
 0.947
SEQ95112.1
Capsular polysaccharide export protein.
     0.885
SEQ95088.1
8-amino-7-oxononanoate synthase.
 
 
 0.771
SEQ28825.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.740
SEQ95469.1
Capsular polysaccharide transport system permease protein.
 
     0.686
SEQ95436.1
Capsular polysaccharide transport system permease protein.
 
     0.663
SEQ95184.1
Capsular polysaccharide export protein.
 
     0.659
SEQ95196.1
Hypothetical protein.
 
    0.658
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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