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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ97644.1Protocatechuate 4,5-dioxygenase, beta chain. (280 aa)    
Predicted Functional Partners:
SEQ39427.1
Protocatechuate 4,5-dioxygenase, alpha chain.
 
 
 0.979
SEQ36460.1
Protocatechuate 4,5-dioxygenase alpha subunit.
 
  
  0.922
SEQ97596.1
Ethylbenzene dioxygenase beta subunit.
 
     0.922
SEQ35758.1
2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase.
 
  
 0.913
SEQ97617.1
Ethylbenzene dioxygenase alpha subunit.
 
  
  0.898
SEQ97589.1
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase.
 
  
  0.886
SEQ35854.1
2-pyrone-4,6-dicarboxylate lactonase.
 
  
 0.883
SEQ97635.1
Ethylbenzene dioxygenase ferredoxin subunit.
 
 
  0.856
SEQ58070.1
P-hydroxybenzoate 3-monooxygenase.
 
  
 0.812
SEQ97558.1
2-keto-4-pentenoate hydratase.
  
    0.802
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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