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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ97666.1Protocatechuate 4,5-dioxygenase, alpha chain. (94 aa)    
Predicted Functional Partners:
SEQ97635.1
Ethylbenzene dioxygenase ferredoxin subunit.
       0.791
SEQ97644.1
Protocatechuate 4,5-dioxygenase, beta chain.
       0.783
SEQ97596.1
Ethylbenzene dioxygenase beta subunit.
       0.779
SEQ97617.1
Ethylbenzene dioxygenase alpha subunit.
       0.766
SEQ97558.1
2-keto-4-pentenoate hydratase.
       0.762
SEQ97568.1
Nitronate monooxygenase.
       0.762
SEQ97589.1
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase.
       0.762
SEQ97685.1
2-hydroxymuconate semialdehyde hydrolase.
       0.664
SEQ97541.1
feruloyl-CoA synthase.
       0.649
SEQ97517.1
Acetaldehyde dehydrogenase (acetylating).
       0.623
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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