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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifWNitrogenase-stabilizing/protective protein; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family. (108 aa)    
Predicted Functional Partners:
SER00873.1
Nitrogen fixation protein NifZ.
 
  
 0.965
SER00904.1
Hypothetical protein.
 
   
 0.950
SER20199.1
Nitrogen fixation protein NifB.
 
  
 0.903
SEQ47113.1
Mo-nitrogenase MoFe protein subunit NifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.902
SER20165.1
Nitrogen fixation protein NifQ.
 
  
 0.859
SEQ47162.1
Nitrogen fixation protein NifX.
 
  
 0.857
SEQ47294.1
Probable nitrogen fixation protein.
 
  
 0.850
SEQ47089.1
Mo-nitrogenase MoFe protein subunit NifD precursor.
 
  
 0.845
SEQ47130.1
Nitrogen fixation protein NifT.
 
  
 0.841
SER00936.1
Homocitrate synthase NifV; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.830
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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