STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER01323.1HD-like signal output (HDOD) domain, no enzymatic activity. (495 aa)    
Predicted Functional Partners:
SEQ53657.1
HDOD domain-containing protein.
  
     0.700
SEQ41196.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.697
SEQ98318.1
HD-like signal output (HDOD) domain, no enzymatic activity.
 
  
  0.684
SEQ29961.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.661
SEQ98306.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.659
SEQ81859.1
Response regulator receiver domain-containing protein.
 
 
  0.651
SEQ28973.1
PilZ domain-containing protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.
  
    0.619
SER12653.1
Type IV pilus assembly protein PilY1.
  
     0.579
SEQ42784.1
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 
     0.527
SEQ94781.1
Tetratricopeptide repeat-containing protein.
  
  
  0.489
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.