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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER03975.1Pimeloyl-ACP methyl ester carboxylesterase. (288 aa)    
Predicted Functional Partners:
SEQ95078.1
Acyl transferase domain-containing protein.
  
 0.968
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
   
 0.901
SEQ74401.1
Cobalt-zinc-cadmium efflux system protein.
 
      0.899
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.784
SER03999.1
D-glycerate 3-kinase.
       0.773
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.751
SER04022.1
Protein of unknown function.
       0.709
SEQ38169.1
Polyhydroxyalkanoate synthase.
  
   
 0.638
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.634
SEQ69184.1
Protein of unknown function.
  
     0.603
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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