STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER04060.1Paraquat-inducible protein B. (880 aa)    
Predicted Functional Partners:
SER04079.1
Paraquat-inducible protein A.
  
 0.964
SER04101.1
Paraquat-inducible protein A.
 
  
 0.956
SER04037.1
Hypothetical protein.
       0.773
SER04117.1
Fructosamine-3-kinase.
  
    0.575
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.435
SEQ36088.1
Autotransporter secretion inner membrane protein TamB.
 
   
 0.418
SEQ24555.1
Phage virion morphogenesis (putative tail completion) protein.
  
     0.408
SER16290.1
Membrane-bound lytic murein transglycosylase B.
  
     0.408
SER04157.1
Phospholipase/carboxylesterase.
       0.405
SER04181.1
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD.
       0.405
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.