STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER08385.1Protein of unknown function. (436 aa)    
Predicted Functional Partners:
SER08414.1
Hypothetical protein.
 
   
 0.934
SER08434.1
Hypothetical protein.
 
   
 0.913
SER08456.1
Uncharacterized protein.
 
  
 0.894
SEQ99602.1
Catechol 2,3-dioxygenase.
  
     0.677
SEQ39657.1
Catechol 2,3-dioxygenase.
  
     0.669
SEQ04287.1
Catechol 2,3-dioxygenase.
  
     0.664
SEQ99611.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
  
     0.657
SER10773.1
Catechol 2,3-dioxygenase.
  
     0.640
SEQ31023.1
Protein of unknown function.
 
    0.629
SEQ02983.1
Protein of unknown function.
  
     0.623
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.