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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER08694.1Catechol 2,3 dioxygenase. (186 aa)    
Predicted Functional Partners:
SEQ94725.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
  
  0.972
SEQ95078.1
Acyl transferase domain-containing protein.
  
 0.895
SER08506.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
  
  0.881
SER08683.1
2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.851
SEQ99611.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
  
  0.843
SER08643.1
2-oxo-3-hexenedioate decarboxylase.
 
   
 0.814
SER20227.1
Urea carboxylase.
  
 
 0.806
SEQ27771.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.803
SEQ39591.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
  
 
 0.803
SER22160.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.803
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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