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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER12639.1Type IV pilus assembly protein PilE. (142 aa)    
Predicted Functional Partners:
SER12653.1
Type IV pilus assembly protein PilY1.
 
  
 0.974
SER12715.1
Type IV pilus assembly protein PilV.
 
  
 0.971
SER12690.1
Type IV pilus assembly protein PilW.
 
  
 0.968
SER12612.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.947
SER12680.1
Type IV pilus assembly protein PilX.
 
  
 0.946
SER12557.1
Type IV pilus assembly protein PilW.
 
  
 0.930
SER12522.1
Type IV pilus assembly protein PilY1.
 
  
 0.927
SER12577.1
Type IV pilus assembly protein PilV.
 
  
 0.922
SER12540.1
Type IV pilus assembly protein PilX.
 
  
 0.916
SER12600.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.901
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.