Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER12639.1 | SER12653.1 | SAMN03080615_04004 | SAMN03080615_04005 | Type IV pilus assembly protein PilE. | Type IV pilus assembly protein PilY1. | 0.974 |
SER12639.1 | SER12680.1 | SAMN03080615_04004 | SAMN03080615_04006 | Type IV pilus assembly protein PilE. | Type IV pilus assembly protein PilX. | 0.946 |
SER12639.1 | SER12690.1 | SAMN03080615_04004 | SAMN03080615_04007 | Type IV pilus assembly protein PilE. | Type IV pilus assembly protein PilW. | 0.968 |
SER12639.1 | SER12729.1 | SAMN03080615_04004 | SAMN03080615_04009 | Type IV pilus assembly protein PilE. | FKBP-type peptidyl-prolyl cis-trans isomerase SlpA. | 0.599 |
SER12639.1 | SER12787.1 | SAMN03080615_04004 | SAMN03080615_04012 | Type IV pilus assembly protein PilE. | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | 0.483 |
SER12639.1 | ileS | SAMN03080615_04004 | SAMN03080615_04011 | Type IV pilus assembly protein PilE. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.550 |
SER12639.1 | lspA | SAMN03080615_04004 | SAMN03080615_04010 | Type IV pilus assembly protein PilE. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.549 |
SER12653.1 | SER12639.1 | SAMN03080615_04005 | SAMN03080615_04004 | Type IV pilus assembly protein PilY1. | Type IV pilus assembly protein PilE. | 0.974 |
SER12653.1 | SER12680.1 | SAMN03080615_04005 | SAMN03080615_04006 | Type IV pilus assembly protein PilY1. | Type IV pilus assembly protein PilX. | 0.972 |
SER12653.1 | SER12690.1 | SAMN03080615_04005 | SAMN03080615_04007 | Type IV pilus assembly protein PilY1. | Type IV pilus assembly protein PilW. | 0.975 |
SER12653.1 | SER12729.1 | SAMN03080615_04005 | SAMN03080615_04009 | Type IV pilus assembly protein PilY1. | FKBP-type peptidyl-prolyl cis-trans isomerase SlpA. | 0.559 |
SER12653.1 | SER12787.1 | SAMN03080615_04005 | SAMN03080615_04012 | Type IV pilus assembly protein PilY1. | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | 0.478 |
SER12653.1 | ileS | SAMN03080615_04005 | SAMN03080615_04011 | Type IV pilus assembly protein PilY1. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.546 |
SER12653.1 | lspA | SAMN03080615_04005 | SAMN03080615_04010 | Type IV pilus assembly protein PilY1. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.549 |
SER12680.1 | SER12639.1 | SAMN03080615_04006 | SAMN03080615_04004 | Type IV pilus assembly protein PilX. | Type IV pilus assembly protein PilE. | 0.946 |
SER12680.1 | SER12653.1 | SAMN03080615_04006 | SAMN03080615_04005 | Type IV pilus assembly protein PilX. | Type IV pilus assembly protein PilY1. | 0.972 |
SER12680.1 | SER12690.1 | SAMN03080615_04006 | SAMN03080615_04007 | Type IV pilus assembly protein PilX. | Type IV pilus assembly protein PilW. | 0.965 |
SER12680.1 | SER12729.1 | SAMN03080615_04006 | SAMN03080615_04009 | Type IV pilus assembly protein PilX. | FKBP-type peptidyl-prolyl cis-trans isomerase SlpA. | 0.557 |
SER12680.1 | SER12787.1 | SAMN03080615_04006 | SAMN03080615_04012 | Type IV pilus assembly protein PilX. | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. | 0.478 |
SER12680.1 | ileS | SAMN03080615_04006 | SAMN03080615_04011 | Type IV pilus assembly protein PilX. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.546 |
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